| Fin | St | Driver | # | Owner | Car | Laps | Money | Status | Laps Led |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 1 | Benoît Tréluyer | 1 | Kazuyoshi Hoshino | Lola B06/51/Toyota RV8J | 65 | 42,454 | running | 60 |
| 2 | 2 | Tsugio Matsuda 松田 次生 | 2 | Kazuyoshi Hoshino | Lola B06/51/Toyota RV8J | 65 | 21,227 | running | 0 |
| 3 | 7 | Loïc Duval | 31 | Satoru Nakajima | Lola B06/51/Honda HF386E | 65 | 12,736 | running | 0 |
| 4 | 11 | Björn Wirdheim | 40 | Kiyoshi Muraoka | Lola B06/51/Honda HF386E | 65 | running | 0 | |
| 5 | 8 | Ronnie Quintarelli | 33 | Haruhisa Urabe | Lola B06/51/Toyota RV8J | 65 | running | 0 | |
| 6 | 4 | Michael Krumm | 20 | Kazuyoshi Hoshino | Lola B06/51/Toyota RV8J | 65 | running | 0 | |
| 7 | 15 | Tatsuya Kataoka 片岡 龍也 | 7 | Team LeMans | Lola B06/51/Toyota RV8J | 65 | running | 0 | |
| 8 | 12 | Takashi Kogure 小暮 卓史 | 32 | Satoru Nakajima | Lola B06/51/Honda HF386E | 65 | running | 0 | |
| 9 | 10 | Masataka Yanagida 柳田 真孝 | 3 | Masahiko Kondo | Lola B06/51/Toyota RV8J | 65 | running | 0 | |
| 10 | 18 | Naoki Yokomizo 横溝 直輝 | 34 | Haruhisa Urabe | Lola B06/51/Toyota RV8J | 65 | running | 0 | |
| 11 | 19 | Seiji Ara 荒 聖治 | 37 | Tachi Oiwa Motor Sport | Lola B06/51/Toyota RV8J | 65 | running | 0 | |
| 12 | 13 | Toshihiro Kaneishi 金石 年弘 | 56 | Aguri Suzuki | Lola B06/51/Honda HF386E | 64 | running | 0 | |
| 13 | 20 | Hiroki Yoshimoto 吉本 大樹 | 6 | Dijon Cars | Lola B06/51/Honda HF386E | 64 | running | 0 | |
| 14 | 9 | Yuji Ide 井出 有治 | 55 | Aguri Suzuki | Lola B06/51/Honda HF386E | 64 | running | 0 | |
| 15 | 14 | Fábio Carbone | 41 | Kiyoshi Muraoka | Lola B06/51/Honda HF386E | 64 | running | 0 | |
| 16 | 17 | Yuji Tachikawa 立川 祐路 | 11 | Masayuki Sato | Lola B06/51/Toyota RV8J | 64 | running | 0 | |
| 17 | 22 | Kota Sasaki 佐々木 孝太 | 12 | Masayuki Sato | Lola B06/51/Toyota RV8J | 63 | running | 0 | |
| 18 | 16 | Toranosuke Takagi 高木 虎之介 | 8 | Team LeMans | Lola B06/51/Toyota RV8J | 50 | did not finish | 0 | |
| 19 | 6 | Satoshi Motoyama 本山 哲 | 19 | Kazuyoshi Hoshino | Lola B06/51/Toyota RV8J | 15 | oil leak | 0 | |
| 20 | 5 | André Lotterer | 36 | Tachi Oiwa Motor Sport | Lola B06/51/Toyota RV8J | 1 | clutch | 0 | |
| 21 | 21 | Katsuyuki Hiranaka 平中 克幸 | 5 | Dijon Cars | Lola B06/51/Honda HF386E | 1 | accident | 0 | |
| 22 | 3 | João Paulo Lima de Oliveira | 4 | Masahiko Kondo | Lola B06/51/Toyota RV8J | 65 | disqualified | 5 |